MGYG000314659

Taxonomy

Mediterraneibacter pullicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter pullicola

Cluster representative

MGYG000318750

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318750 on MGnify
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Annotations

MGYG000314659’s cluster representative genome MGYG000318750 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318750 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314659 Copy API Endpoint

MGYG000314659’s cluster representative (MGYG000318750) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318750’s sequence. Because MGYG000314659 has been clustered with MGYG000318750 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314659.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318750

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Containment	Sample accession	Animal accession	Treatment
0.99	SAMEA7697588	SAMEA112905360	Probiotic
0.99	SAMEA7025275	SAMEA112905332	Probiotic
0.98	SAMEA10455483	SAMEA112905075	Prebiotic
0.98	SAMEA7025258	SAMEA112905159	Probiotic
0.98	SAMEA14099421	SAMEA112905128	Control
0.98	SAMEA7025254	SAMEA112904883	Prebiotic
0.98	SAMEA9449963	SAMEA112905164	Probiotic
0.98	SAMEA9449952	SAMEA112905334	Probiotic
0.97	SAMEA10159255	SAMEA112904948	Probiotic
0.97	SAMEA14095989	SAMEA112904946	Prebiotic