HoloFood Data Portal

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MGYG000314423

Details for MGYG000314423, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Bacteroides fragilis_A Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Bacteroides > Bacteroides fragilis_A
Cluster representative

MGYG000317725

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317725 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314423’s cluster representative genome MGYG000317725 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317725 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314423 Copy API Endpoint
Samples containing this genome

MGYG000314423’s cluster representative (MGYG000317725) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317725’s sequence. Because MGYG000314423 has been clustered with MGYG000317725 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314423.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317725

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Containment Sample accession Animal accession Treatment
0.27 SAMEA10104923 Control
0.27 SAMEA7697637 Prebiotic
0.26 SAMEA10145585 Control
0.26 SAMEA10105035 Probiotic
0.25 SAMEA7697636 Prebiotic
0.25 SAMEA7697608 Control
0.25 SAMEA10104921 Prebiotic
0.25 SAMEA10145599 Control
0.25 SAMEA10104972 Probiotic
0.24 SAMEA7025283 Control