HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905004: a HoloFood chicken host

Data available for SAMEA112905004


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905004 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905004, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.15 g
Average Daily Feed intake: Day 00 - 35 81.43 g
Average Daily Feed intake: Day 07 - 21 74.3 g
Average Daily Feed intake: Day 21 - 35 122.32 g
Average Daily Gain: Day 00 - 07 21.44 g
Average Daily Gain: Day 00 - 35 54.4 g
Average Daily Gain: Day 07 - 21 51.67 g
Average Daily Gain: Day 21 - 35 73.62 g
Average European Performance Efficiency Factor: Day 00 - 07 217.24 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.438 None
Average Feed to Conversion Ratio: Day 07 - 21 1.438 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.89 g
Average body weight at day 07 195.95 g
Average body weight at day 21 919.35 g
Average body weight at day 35 1950 g
European Performance Efficiency Factor: Day 00 - 35 345.3 None
European Performance Efficiency Factor: Day 07 - 21 359.34 None
European Performance Efficiency Factor: Day 21 - 35 414.47 None
FCR (not corrected): Day 00 - 07 0.987 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.549 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.79 None
Feed to Conversion Ratio: Day 00 - 07 0.987 g/g
Feed to Conversion Ratio: Day 00 - 35 1.497 g/g
Feed to Conversion Ratio: Day 21 - 35 1.662 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=50.00 P1=30.00 P2=20.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.59 pH
Litter at Day 21 6.77 pH
Litter at Day 35 8.27 pH
Mean Abdominal fat Yield 1.49 %
Mean Abdominal fat weight 30.56 g
Mean Breast Yield 17.53 %
Mean Breast weight 356.7 g
Mean CRP at Day 07 2.2698 pg/mg
Mean CRP at Day 21 3.0786 pg/mg
Mean CRP at Day 35 1.1427 pg/mg
Mean Carcass Weight 1536.7 g
Mean Carcass Yield 75.91 %
Mean HPT at Day 07 0.59161 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 5.1167 ng/L
Mean LPS at Day 21 3.4778 ng/L
Mean LPS at Day 35 6.3319 ng/L
Mean Legs Yield 20.32 %
Mean Legs weight 410.56 g
Mean TBARS 0.0367 mg MDA/kg
Mean carcass body weight 2020 g
Mean feather cortisol at Day 07 6.635 pg/mg
Mean feather cortisol at Day 21 15.143 pg/mg
Mean feather cortisol at Day 35 13.332 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 5 %
Mortality without culleds: Day 21 - 35 6.45 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 6.45 %
Pen code CC14 None

Sample metadata

Marker Measurement Units
Animal code CC14.02 None
Breed Cobb None
C-Reactive protein 5.72 pg/ml
Chicken body weight 176.9 g
Feather cortisol 9.6 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 33.67 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None