HoloFood Data Portal

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MGYG000314308

Details for MGYG000314308, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia > Blautia stercorigallinarum
Cluster representative

MGYG000320616

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320616 on MGnify
 Show other genomes in cluster
Annotations

MGYG000314308’s cluster representative genome MGYG000320616 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320616 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000314308 Copy API Endpoint
Samples containing this genome

MGYG000314308’s cluster representative (MGYG000320616) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320616’s sequence. Because MGYG000314308 has been clustered with MGYG000320616 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000314308.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320616

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025256 Prebiotic
0.99 SAMEA7571795 Prebiotic
0.93 SAMEA7025241 Probiotic
0.92 SAMEA10455502 Probiotic
0.92 SAMEA7025284 Control
0.91 SAMEA7025276 Control
0.91 SAMEA7025260 Prebiotic
0.90 SAMEA7025254 Prebiotic
0.90 SAMEA7025263 Control
0.87 SAMEA7025238 Probiotic