HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000313810

Details for MGYG000313810, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
WRFS01 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > WRFS01
Cluster representative

MGYG000313810

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313810 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313810’s cluster representative genome MGYG000313810 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313810 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313810 Copy API Endpoint
Samples containing this genome

MGYG000313810’s cluster representative (MGYG000313810) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313810’s sequence. Because MGYG000313810 has been clustered with MGYG000313810 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313810.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313810

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.88 SAMEA14099424 Prebiotic
0.87 SAMEA7025287 Prebiotic
0.87 SAMEA7025283 Control
0.87 SAMEA9449860 Control
0.86 SAMEA10145595 Control
0.86 SAMEA14099422 Control
0.86 SAMEA9449840 Probiotic
0.86 SAMEA7697637 Prebiotic
0.86 SAMEA7697601 Prebiotic
0.85 SAMEA9449928 Prebiotic