MGYG000313201

Taxonomy

Bacteroides fragilis_A Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Bacteroides > Bacteroides fragilis_A

Cluster representative

MGYG000317725

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317725 on MGnify
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Annotations

MGYG000313201’s cluster representative genome MGYG000317725 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317725 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313201 Copy API Endpoint

MGYG000313201’s cluster representative (MGYG000317725) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317725’s sequence. Because MGYG000313201 has been clustered with MGYG000317725 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313201.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317725

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449934	SAMEA112905297	Control
1.00	SAMEA9449912	SAMEA112904962	Probiotic
1.00	SAMEA9449956	SAMEA112904759	Probiotic
1.00	SAMEA9449945	SAMEA112904907	Prebiotic
1.00	SAMEA9449950	SAMEA112904761	Prebiotic
1.00	SAMEA7697624	SAMEA112905336	Probiotic
1.00	SAMEA7697603	SAMEA112904932	Probiotic
1.00	SAMEA7697602	SAMEA112905015	Probiotic
1.00	SAMEA10105051	SAMEA112904756	Control
1.00	SAMEA9449947	SAMEA112905276	Prebiotic