HoloFood Data Portal

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MGYG000313096

Details for MGYG000313096, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Bacteroides uniformis Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Bacteroides > Bacteroides uniformis
Cluster representative

MGYG000308249

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308249 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313096’s cluster representative genome MGYG000308249 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308249 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313096 Copy API Endpoint
Samples containing this genome

MGYG000313096’s cluster representative (MGYG000308249) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308249’s sequence. Because MGYG000313096 has been clustered with MGYG000308249 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313096.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308249

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Containment Sample accession Animal accession Treatment
0.86 SAMEA10145597 Control
0.86 SAMEA7571832 Control
0.85 SAMEA10145595 Control
0.85 SAMEA7025287 Prebiotic
0.84 SAMEA7025288 Control
0.82 SAMEA7025277 Control
0.82 SAMEA7571845 Control
0.82 SAMEA9449949 Prebiotic
0.82 SAMEA10454449 Prebiotic
0.82 SAMEA7697633 Prebiotic