HoloFood Data Portal

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MGYG000312912

Details for MGYG000312912, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
JAGHEK01 sp017889265 Bacteria > Firmicutes_A > Clostridia > Peptostreptococcales > Peptostreptococcaceae > JAGHEK01 > JAGHEK01 sp017889265
Cluster representative

MGYG000312549

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312549 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312912’s cluster representative genome MGYG000312549 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312549 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312912 Copy API Endpoint
Samples containing this genome

MGYG000312912’s cluster representative (MGYG000312549) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312549’s sequence. Because MGYG000312912 has been clustered with MGYG000312549 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312912.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312549

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Containment Sample accession Animal accession Treatment
0.86 SAMEA7025263 Control
0.86 SAMEA9449965 Probiotic
0.85 SAMEA10158038 Control
0.85 SAMEA7368181 Probiotic
0.85 SAMEA7025260 Prebiotic
0.85 SAMEA10158022 Control
0.85 SAMEA9449894 Probiotic
0.84 SAMEA10130108 Control
0.84 SAMEA10130001 Probiotic
0.82 SAMEA10105040 Control