HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000312667

Details for MGYG000312667, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter vanvlietii Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter vanvlietii
Cluster representative

MGYG000320452

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320452 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312667’s cluster representative genome MGYG000320452 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320452 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312667 Copy API Endpoint
Samples containing this genome

MGYG000312667’s cluster representative (MGYG000320452) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320452’s sequence. Because MGYG000312667 has been clustered with MGYG000320452 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312667.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320452

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10455476 Probiotic
1.00 SAMEA7697598 Control
0.98 SAMEA10104922 Prebiotic
0.90 SAMEA7697596 Prebiotic
0.88 SAMEA7025245 Probiotic
0.83 SAMEA9449839 Control
0.82 SAMEA7025277 Control
0.81 SAMEA9449902 Control
0.79 SAMEA7571770 Probiotic
0.79 SAMEA9449889 Probiotic