MGYG000312266

Taxonomy

Intestinimonas stercoravium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Intestinimonas > Intestinimonas stercoravium

Cluster representative

MGYG000318105

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318105 on MGnify
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Annotations

MGYG000312266’s cluster representative genome MGYG000318105 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318105 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312266 Copy API Endpoint

MGYG000312266’s cluster representative (MGYG000318105) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318105’s sequence. Because MGYG000312266 has been clustered with MGYG000318105 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312266.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318105

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Containment	Sample accession	Animal accession	Treatment
0.99	SAMEA7025263	SAMEA112905147	Control
0.98	SAMEA9449873	SAMEA112904851	Prebiotic
0.97	SAMEA7571816	SAMEA112904788	Prebiotic
0.97	SAMEA7025266	SAMEA112905005	Probiotic
0.97	SAMEA7025261	SAMEA112905342	Probiotic
0.97	SAMEA10104989	SAMEA112905384	Prebiotic
0.97	SAMEA10455495	SAMEA112904921	Control
0.96	SAMEA7571822	SAMEA112904992	Probiotic
0.96	SAMEA9449847	SAMEA112905053	Probiotic
0.96	SAMEA9449854	SAMEA112905061	Prebiotic