HoloFood Data Portal

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MGYG000311539

Details for MGYG000311539, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdicola sp001915925 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > Merdicola > Merdicola sp001915925
Cluster representative

MGYG000314365

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314365 on MGnify
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Annotations

MGYG000311539’s cluster representative genome MGYG000314365 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314365 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311539 Copy API Endpoint
Samples containing this genome

MGYG000311539’s cluster representative (MGYG000314365) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314365’s sequence. Because MGYG000311539 has been clustered with MGYG000314365 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311539.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314365

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571770 Probiotic
0.99 SAMEA7025258 Probiotic
0.97 SAMEA10104926 Prebiotic
0.96 SAMEA9449902 Control
0.96 SAMEA10104996 Prebiotic
0.95 SAMEA10104989 Prebiotic
0.95 SAMEA10105049 Control
0.95 SAMEA7571782 Prebiotic
0.92 SAMEA10104953 Prebiotic
0.92 SAMEA9449955 Probiotic