HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311538

Details for MGYG000311538, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Agathobaculum pullistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Agathobaculum > Agathobaculum pullistercoris
Cluster representative

MGYG000317381

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317381 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311538’s cluster representative genome MGYG000317381 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317381 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311538 Copy API Endpoint
Samples containing this genome

MGYG000311538’s cluster representative (MGYG000317381) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317381’s sequence. Because MGYG000311538 has been clustered with MGYG000317381 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311538.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317381

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.26 SAMEA7025280 Probiotic
0.25 SAMEA7571777 Control
0.25 SAMEA10455500 Control
0.25 SAMEA10455483 Prebiotic
0.25 SAMEA10130122 Prebiotic
0.25 SAMEA10105068 Prebiotic
0.25 SAMEA9449913 Probiotic
0.25 SAMEA7697578 Control
0.25 SAMEA7571873 Prebiotic
0.25 SAMEA10104933 Control