HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311251

Details for MGYG000311251, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Escherichia coli Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli
Cluster representative

MGYG000312616

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312616 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311251’s cluster representative genome MGYG000312616 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312616 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311251 Copy API Endpoint
Samples containing this genome

MGYG000311251’s cluster representative (MGYG000312616) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312616’s sequence. Because MGYG000311251 has been clustered with MGYG000312616 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311251.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312616

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.93 SAMEA7025276 Control
0.93 SAMEA10455501 Probiotic
0.93 SAMEA7697583 Probiotic
0.93 SAMEA10159199 Control
0.93 SAMEA7025251 Control
0.92 SAMEA10104993 Prebiotic
0.92 SAMEA7025234 Control
0.92 SAMEA10130125 Prebiotic
0.92 SAMEA7025247 Probiotic
0.92 SAMEA7571794 Prebiotic