HoloFood Data Portal

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MGYG000310611

Details for MGYG000310611, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Alistipes excrementavium Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes excrementavium
Cluster representative

MGYG000310170

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310170 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310611’s cluster representative genome MGYG000310170 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310170 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310611 Copy API Endpoint
Samples containing this genome

MGYG000310611’s cluster representative (MGYG000310170) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310170’s sequence. Because MGYG000310611 has been clustered with MGYG000310170 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310611.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310170

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Containment Sample accession Animal accession Treatment
0.37 SAMEA7697636 Prebiotic
0.37 SAMEA7571832 Control
0.37 SAMEA7697626 Probiotic
0.36 SAMEA10159247 Control
0.35 SAMEA7697617 Prebiotic
0.35 SAMEA7571863 Probiotic
0.35 SAMEA10159251 Control
0.34 SAMEA7571843 Prebiotic
0.34 SAMEA7571835 Prebiotic
0.33 SAMEA7697625 Probiotic