HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000310523

Details for MGYG000310523, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Bacteroides congonensis Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Bacteroides > Bacteroides congonensis
Cluster representative

MGYG000315924

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315924 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310523’s cluster representative genome MGYG000315924 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315924 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310523 Copy API Endpoint
Samples containing this genome

MGYG000310523’s cluster representative (MGYG000315924) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315924’s sequence. Because MGYG000310523 has been clustered with MGYG000315924 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310523.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315924

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.50 SAMEA7571764 Control
0.44 SAMEA9449867 Control
0.40 SAMEA10104928 Prebiotic
0.32 SAMEA7025262 Control
0.29 SAMEA7571829 Prebiotic
0.28 SAMEA7025286 Prebiotic
0.27 SAMEA9449883 Control
0.27 SAMEA10145585 Control
0.24 SAMEA9449896 Prebiotic
0.22 SAMEA9449900 Control