HoloFood Data Portal

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MGYG000310518

Details for MGYG000310518, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Eubacterium_R faecale Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Eubacterium_R > Eubacterium_R faecale
Cluster representative

MGYG000309390

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309390 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310518’s cluster representative genome MGYG000309390 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309390 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310518 Copy API Endpoint
Samples containing this genome

MGYG000310518’s cluster representative (MGYG000309390) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309390’s sequence. Because MGYG000310518 has been clustered with MGYG000309390 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310518.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309390

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Containment Sample accession Animal accession Treatment
1.00 SAMEA14095991 Control
1.00 SAMEA7025266 Probiotic
0.98 SAMEA10104996 Prebiotic
0.98 SAMEA10159266 Control
0.98 SAMEA10104984 Control
0.98 SAMEA9449947 Prebiotic
0.96 SAMEA10454444 Probiotic
0.96 SAMEA7571808 Control
0.95 SAMEA7571770 Probiotic
0.94 SAMEA7697612 Control