HoloFood Data Portal

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MGYG000310379

Details for MGYG000310379, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Dysosmobacter Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Dysosmobacter
Cluster representative

MGYG000316966

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316966 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310379’s cluster representative genome MGYG000316966 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316966 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310379 Copy API Endpoint
Samples containing this genome

MGYG000310379’s cluster representative (MGYG000316966) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316966’s sequence. Because MGYG000310379 has been clustered with MGYG000316966 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310379.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316966

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Containment Sample accession Animal accession Treatment
0.89 SAMEA7025274 Probiotic
0.89 SAMEA7025249 Prebiotic
0.88 SAMEA7025242 Control
0.88 SAMEA10104992 Prebiotic
0.87 SAMEA7571810 Prebiotic
0.87 SAMEA7697583 Probiotic
0.87 SAMEA10104964 Control
0.87 SAMEA7571814 Prebiotic
0.86 SAMEA10104961 Probiotic
0.86 SAMEA7697623 Probiotic