HoloFood Data Portal

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MGYG000310089

Details for MGYG000310089, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimimorpha faecalis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Fimimorpha > Fimimorpha faecalis
Cluster representative

MGYG000310152

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310152 on MGnify
 Show other genomes in cluster
Annotations

MGYG000310089’s cluster representative genome MGYG000310152 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310152 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310089 Copy API Endpoint
Samples containing this genome

MGYG000310089’s cluster representative (MGYG000310152) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310152’s sequence. Because MGYG000310089 has been clustered with MGYG000310152 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310089.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310152

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Containment Sample accession Animal accession Treatment
0.88 SAMEA10104981 Probiotic
0.87 SAMEA9449844 Control
0.87 SAMEA10145595 Control
0.87 SAMEA7025236 Probiotic
0.87 SAMEA7571812 Control
0.87 SAMEA7025262 Control
0.87 SAMEA10105051 Control
0.87 SAMEA7571850 Prebiotic
0.87 SAMEA9449947 Prebiotic
0.87 SAMEA7571778 Control