MGYG000310038

Taxonomy

Coproplasma stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma stercorigallinarum

Cluster representative

MGYG000311580

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311580 on MGnify
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Annotations

MGYG000310038’s cluster representative genome MGYG000311580 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311580 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310038 Copy API Endpoint

MGYG000310038’s cluster representative (MGYG000311580) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311580’s sequence. Because MGYG000310038 has been clustered with MGYG000311580 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310038.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311580

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571817	SAMEA112905294	Control
1.00	SAMEA7697602	SAMEA112905015	Probiotic
1.00	SAMEA9449915	SAMEA112905199	Probiotic
1.00	SAMEA7571829	SAMEA112905154	Prebiotic
1.00	SAMEA7571820	SAMEA112905089	Probiotic
1.00	SAMEA7025271	SAMEA112905138	Probiotic
1.00	SAMEA7025268	SAMEA112904966	Control
1.00	SAMEA10104977	SAMEA112905312	Control
1.00	SAMEA7571870	SAMEA112905255	Prebiotic
1.00	SAMEA10159261	SAMEA112904837	Prebiotic