MGYG000309960

Taxonomy

Choladocola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Choladocola

Cluster representative

MGYG000319712

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319712 on MGnify
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Annotations

MGYG000309960’s cluster representative genome MGYG000319712 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319712 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309960 Copy API Endpoint

MGYG000309960’s cluster representative (MGYG000319712) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319712’s sequence. Because MGYG000309960 has been clustered with MGYG000319712 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309960.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319712

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA9449937	SAMEA112904952	Probiotic
0.21	SAMEA10104918	SAMEA112904806	Probiotic
0.21	SAMEA7571835	SAMEA112905381	Prebiotic
0.21	SAMEA10104972	SAMEA112905094	Probiotic
0.21	SAMEA10455477	SAMEA112905240	Probiotic
0.21	SAMEA9449867	SAMEA112905056	Control
0.21	SAMEA7697590	SAMEA112905010	Control
0.20	SAMEA7571790	SAMEA112905026	Prebiotic
0.20	SAMEA9449843	SAMEA112905093	Probiotic
0.20	SAMEA10105026	SAMEA112905315	Control