HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309860

Details for MGYG000309860, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Massiliomicrobiota merdigallinarum Bacteria > Firmicutes > Bacilli > Erysipelotrichales > Coprobacillaceae > Massiliomicrobiota > Massiliomicrobiota merdigallinarum
Cluster representative

MGYG000315561

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315561 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309860’s cluster representative genome MGYG000315561 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315561 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309860 Copy API Endpoint
Samples containing this genome

MGYG000309860’s cluster representative (MGYG000315561) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315561’s sequence. Because MGYG000309860 has been clustered with MGYG000315561 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309860.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315561

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571810 Prebiotic
0.99 SAMEA7722476 Control
0.99 SAMEA7025234 Control
0.99 SAMEA9449947 Prebiotic
0.99 SAMEA7571823 Probiotic
0.99 SAMEA10104915 Control
0.99 SAMEA14095991 Control
0.99 SAMEA7697584 Control
0.99 SAMEA10105017 Probiotic
0.98 SAMEA10105037 Probiotic