MGYG000309809

Taxonomy

Ruthenibacterium merdavium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Ruthenibacterium > Ruthenibacterium merdavium

Cluster representative

MGYG000310100

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310100 on MGnify
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Annotations

MGYG000309809’s cluster representative genome MGYG000310100 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310100 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309809 Copy API Endpoint

MGYG000309809’s cluster representative (MGYG000310100) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310100’s sequence. Because MGYG000309809 has been clustered with MGYG000310100 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309809.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310100

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025288	SAMEA112905217	Control
1.00	SAMEA10105071	SAMEA112904878	Prebiotic
1.00	SAMEA7697623	SAMEA112905102	Probiotic
0.99	SAMEA9449918	SAMEA112904775	Probiotic
0.99	SAMEA7571823	SAMEA112904842	Probiotic
0.99	SAMEA7697620	SAMEA112904920	Prebiotic
0.99	SAMEA10105040	SAMEA112905163	Control
0.99	SAMEA7571863	SAMEA112905012	Probiotic
0.98	SAMEA7571848	SAMEA112905284	Prebiotic
0.96	SAMEA9449915	SAMEA112905199	Probiotic