HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309684

Details for MGYG000309684, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lachnoclostridium_A stercoravium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A stercoravium
Cluster representative

MGYG000315991

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315991 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309684’s cluster representative genome MGYG000315991 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315991 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309684 Copy API Endpoint
Samples containing this genome

MGYG000309684’s cluster representative (MGYG000315991) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315991’s sequence. Because MGYG000309684 has been clustered with MGYG000315991 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309684.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315991

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Containment Sample accession Animal accession Treatment
0.91 SAMEA10145589 Control
0.90 SAMEA7697602 Probiotic
0.90 SAMEA10105024 Control
0.89 SAMEA9449833 Probiotic
0.89 SAMEA10455477 Probiotic
0.89 SAMEA7697634 Control
0.88 SAMEA7571807 Probiotic
0.88 SAMEA9449947 Prebiotic
0.88 SAMEA10104961 Probiotic
0.88 SAMEA7025250 Control