HoloFood Data Portal

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MGYG000309659

Details for MGYG000309659, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000313508

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313508 on MGnify
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Annotations

MGYG000309659’s cluster representative genome MGYG000313508 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313508 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309659 Copy API Endpoint
Samples containing this genome

MGYG000309659’s cluster representative (MGYG000313508) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313508’s sequence. Because MGYG000309659 has been clustered with MGYG000313508 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309659.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313508

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Containment Sample accession Animal accession Treatment
0.31 SAMEA9449955 Probiotic
0.30 SAMEA7571819 Probiotic
0.29 SAMEA7697624 Probiotic
0.29 SAMEA7571764 Control
0.28 SAMEA9449867 Control
0.28 SAMEA7571797 Control
0.28 SAMEA7571793 Prebiotic
0.28 SAMEA9449852 Prebiotic
0.28 SAMEA10104995 Prebiotic
0.27 SAMEA10455483 Prebiotic