HoloFood Data Portal

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MGYG000309514

Details for MGYG000309514, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-273 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-273
Cluster representative

MGYG000313930

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313930 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309514’s cluster representative genome MGYG000313930 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313930 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309514 Copy API Endpoint
Samples containing this genome

MGYG000309514’s cluster representative (MGYG000313930) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313930’s sequence. Because MGYG000309514 has been clustered with MGYG000313930 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309514.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313930

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Containment Sample accession Animal accession Treatment
0.32 SAMEA10159254 Control
0.32 SAMEA9449942 Control
0.32 SAMEA9449937 Probiotic
0.32 SAMEA10105071 Prebiotic
0.32 SAMEA7571856 Probiotic
0.32 SAMEA7697586 Prebiotic
0.32 SAMEA10104933 Control
0.31 SAMEA7697633 Prebiotic
0.31 SAMEA10105015 Probiotic
0.30 SAMEA10105052 Control