MGYG000309440

Taxonomy

Lactobacillus crispatus Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus crispatus

Cluster representative

MGYG000317747

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317747 on MGnify
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Annotations

MGYG000309440’s cluster representative genome MGYG000317747 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317747 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309440 Copy API Endpoint

MGYG000309440’s cluster representative (MGYG000317747) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317747’s sequence. Because MGYG000309440 has been clustered with MGYG000317747 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309440.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317747

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449907	SAMEA112905341	Prebiotic
1.00	SAMEA10130033	SAMEA112905208	Control
1.00	SAMEA7025259	SAMEA112905304	Prebiotic
1.00	SAMEA7025248	SAMEA112905319	Probiotic
1.00	SAMEA10129985	SAMEA112904797	Control
1.00	SAMEA10455495	SAMEA112904921	Control
1.00	SAMEA7025260	SAMEA112905317	Prebiotic
1.00	SAMEA7368184	SAMEA112905304	Prebiotic
1.00	SAMEA7368181	SAMEA112905298	Probiotic
1.00	SAMEA7368177	SAMEA112905113	Probiotic