MGYG000309304

Taxonomy

CAG-314 sp000437915 Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-314 > CAG-314 > CAG-314 sp000437915

Cluster representative

MGYG000309575

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309575 on MGnify
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Annotations

MGYG000309304’s cluster representative genome MGYG000309575 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309575 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309304 Copy API Endpoint

MGYG000309304’s cluster representative (MGYG000309575) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309575’s sequence. Because MGYG000309304 has been clustered with MGYG000309575 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309304.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309575

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10145595	SAMEA112904895	Control
1.00	SAMEA14409936	SAMEA112904743	Control
1.00	SAMEA14095989	SAMEA112904946	Prebiotic
1.00	SAMEA9449928	SAMEA112904898	Prebiotic
1.00	SAMEA7571845	SAMEA112904735	Control
1.00	SAMEA7025245	SAMEA112904855	Probiotic
1.00	SAMEA9449963	SAMEA112905164	Probiotic
1.00	SAMEA7025283	SAMEA112904873	Control
1.00	SAMEA7025247	SAMEA112905298	Probiotic
1.00	SAMEA7722473	SAMEA112905065	Prebiotic