MGYG000309304

Taxonomy

CAG-314 sp000437915 Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-314 > CAG-314 > CAG-314 sp000437915

Cluster representative

MGYG000309575

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309575 on MGnify
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Annotations

MGYG000309304’s cluster representative genome MGYG000309575 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309575 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309304 Copy API Endpoint

MGYG000309304’s cluster representative (MGYG000309575) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309575’s sequence. Because MGYG000309304 has been clustered with MGYG000309575 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309304.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309575

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571801	SAMEA112904766	Probiotic
1.00	SAMEA10105047	SAMEA112905233	Control
1.00	SAMEA7697626	SAMEA112905069	Probiotic
1.00	SAMEA7025275	SAMEA112905332	Probiotic
1.00	SAMEA10145601	SAMEA112905257	Control
1.00	SAMEA10159244	SAMEA112905364	Probiotic
1.00	SAMEA10145560	SAMEA112904810	Control
1.00	SAMEA7025277	SAMEA112905229	Control
0.99	SAMEA9449958	SAMEA112904885	Probiotic
0.99	SAMEA7025246	SAMEA112905368	Probiotic