HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309292

Details for MGYG000309292, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ventrenecus stercoripullorum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Ventrenecus > Ventrenecus stercoripullorum
Cluster representative

MGYG000316637

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316637 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309292’s cluster representative genome MGYG000316637 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316637 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309292 Copy API Endpoint
Samples containing this genome

MGYG000309292’s cluster representative (MGYG000316637) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316637’s sequence. Because MGYG000309292 has been clustered with MGYG000316637 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309292.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316637

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Containment Sample accession Animal accession Treatment
0.93 SAMEA7697617 Prebiotic
0.92 SAMEA10104930 Control
0.92 SAMEA10145585 Control
0.92 SAMEA7571810 Prebiotic
0.92 SAMEA10104915 Control
0.92 SAMEA7025269 Probiotic
0.92 SAMEA7571820 Probiotic
0.92 SAMEA7025287 Prebiotic
0.90 SAMEA7025250 Control
0.90 SAMEA10454446 Probiotic