HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309228

Details for MGYG000309228, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecivivens stercoravium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Faecivivens > Faecivivens stercoravium
Cluster representative

MGYG000308991

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308991 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309228’s cluster representative genome MGYG000308991 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308991 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309228 Copy API Endpoint
Samples containing this genome

MGYG000309228’s cluster representative (MGYG000308991) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308991’s sequence. Because MGYG000309228 has been clustered with MGYG000308991 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309228.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308991

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025266 Probiotic
0.98 SAMEA7697576 Prebiotic
0.97 SAMEA7025260 Prebiotic
0.97 SAMEA7025251 Control
0.95 SAMEA7025234 Control
0.95 SAMEA7025250 Control
0.94 SAMEA7025282 Control
0.92 SAMEA7025236 Probiotic
0.90 SAMEA14095991 Control
0.90 SAMEA10104991 Prebiotic