HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309033

Details for MGYG000309033, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Flavonifractor intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Flavonifractor > Flavonifractor intestinigallinarum
Cluster representative

MGYG000318995

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318995 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309033’s cluster representative genome MGYG000318995 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318995 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309033 Copy API Endpoint
Samples containing this genome

MGYG000309033’s cluster representative (MGYG000318995) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318995’s sequence. Because MGYG000309033 has been clustered with MGYG000318995 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309033.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318995

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Containment Sample accession Animal accession Treatment
0.99 SAMEA9449907 Prebiotic
0.99 SAMEA7025254 Prebiotic
0.99 SAMEA9449938 Prebiotic
0.99 SAMEA10104953 Prebiotic
0.99 SAMEA7571791 Control
0.99 SAMEA10159265 Probiotic
0.99 SAMEA9449904 Control
0.99 SAMEA10105049 Control
0.99 SAMEA10104996 Prebiotic
0.98 SAMEA7571844 Control