HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309006

Details for MGYG000309006, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Methanomassiliicoccus_A Archaea > Thermoplasmatota > Thermoplasmata > Methanomassiliicoccales > Methanomassiliicoccaceae > Methanomassiliicoccus_A
Cluster representative

MGYG000315547

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315547 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309006’s cluster representative genome MGYG000315547 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315547 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309006 Copy API Endpoint
Samples containing this genome

MGYG000309006’s cluster representative (MGYG000315547) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315547’s sequence. Because MGYG000309006 has been clustered with MGYG000315547 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309006.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315547

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Containment Sample accession Animal accession Treatment
0.98 SAMEA10145583 Control
0.98 SAMEA7571801 Probiotic
0.98 SAMEA9449866 Probiotic
0.98 SAMEA7697584 Control
0.97 SAMEA10159267 Control
0.94 SAMEA10145556 Control
0.84 SAMEA10145595 Control
0.82 SAMEA7025283 Control
0.82 SAMEA10105047 Control
0.82 SAMEA10145601 Control