HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308869

Details for MGYG000308869, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lactobacillus pullistercoris Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus pullistercoris
Cluster representative

MGYG000320979

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320979 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308869’s cluster representative genome MGYG000320979 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320979 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308869 Copy API Endpoint
Samples containing this genome

MGYG000308869’s cluster representative (MGYG000320979) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320979’s sequence. Because MGYG000308869 has been clustered with MGYG000320979 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308869.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320979

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Containment Sample accession Animal accession Treatment
0.89 SAMEA10145598 Control
0.88 SAMEA7368187 Control
0.88 SAMEA7368186 Probiotic
0.88 SAMEA10145594 Control
0.87 SAMEA7368188 Control
0.87 SAMEA7025274 Probiotic
0.87 SAMEA10130127 Prebiotic
0.87 SAMEA10130112 Probiotic
0.87 SAMEA10130113 Control
0.87 SAMEA10129985 Control