HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308841

Details for MGYG000308841, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas
Cluster representative

MGYG000317399

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317399 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308841’s cluster representative genome MGYG000317399 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317399 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308841 Copy API Endpoint
Samples containing this genome

MGYG000308841’s cluster representative (MGYG000317399) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317399’s sequence. Because MGYG000308841 has been clustered with MGYG000317399 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308841.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317399

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Containment Sample accession Animal accession Treatment
0.23 SAMEA7571833 Prebiotic
0.23 SAMEA10105039 Probiotic
0.23 SAMEA7571868 Prebiotic
0.23 SAMEA10159251 Control
0.23 SAMEA7697581 Probiotic
0.23 SAMEA10104995 Prebiotic
0.23 SAMEA7571819 Probiotic
0.23 SAMEA10105025 Prebiotic
0.23 SAMEA9449946 Prebiotic
0.23 SAMEA9449932 Prebiotic