HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308725

Details for MGYG000308725, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Negativibacillus faecipullorum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Negativibacillus > Negativibacillus faecipullorum
Cluster representative

MGYG000308854

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308854 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308725’s cluster representative genome MGYG000308854 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308854 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308725 Copy API Endpoint
Samples containing this genome

MGYG000308725’s cluster representative (MGYG000308854) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308854’s sequence. Because MGYG000308725 has been clustered with MGYG000308854 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308725.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308854

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Containment Sample accession Animal accession Treatment
0.96 SAMEA10105051 Control
0.95 SAMEA7025251 Control
0.95 SAMEA10145597 Control
0.94 SAMEA14409936 Control
0.94 SAMEA9449860 Control
0.94 SAMEA10104922 Prebiotic
0.93 SAMEA10104983 Control
0.93 SAMEA7025256 Prebiotic
0.93 SAMEA10105009 Prebiotic
0.92 SAMEA7025277 Control