HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308691

Details for MGYG000308691, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lachnoclostridium_A stercoravium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A stercoravium
Cluster representative

MGYG000315991

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315991 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308691’s cluster representative genome MGYG000315991 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315991 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308691 Copy API Endpoint
Samples containing this genome

MGYG000308691’s cluster representative (MGYG000315991) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315991’s sequence. Because MGYG000308691 has been clustered with MGYG000315991 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308691.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315991

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Containment Sample accession Animal accession Treatment
0.24 SAMEA10104964 Control
0.24 SAMEA10104955 Control
0.24 SAMEA7697611 Prebiotic
0.24 SAMEA9449882 Control
0.24 SAMEA7571839 Control
0.24 SAMEA10159250 Probiotic
0.24 SAMEA10105047 Control
0.24 SAMEA7697600 Prebiotic
0.24 SAMEA9449859 Probiotic
0.23 SAMEA10454445 Probiotic