MGYG000308676

Taxonomy

Caccovivens sp904397185 Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens > Caccovivens sp904397185

Cluster representative

MGYG000320434

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320434 on MGnify
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Annotations

MGYG000308676’s cluster representative genome MGYG000320434 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320434 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308676 Copy API Endpoint

MGYG000308676’s cluster representative (MGYG000320434) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320434’s sequence. Because MGYG000308676 has been clustered with MGYG000320434 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308676.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320434

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Containment	Sample accession	Animal accession	Treatment
0.23	SAMEA9449856	SAMEA112905272	Prebiotic
0.23	SAMEA9449923	SAMEA112904816	Probiotic
0.23	SAMEA7025277	SAMEA112905229	Control
0.23	SAMEA7571795	SAMEA112905322	Prebiotic
0.22	SAMEA10104921	SAMEA112905172	Prebiotic
0.21	SAMEA9449835	SAMEA112904998	Probiotic
0.21	SAMEA10145570	SAMEA112904939	Control
0.21	SAMEA10104915	SAMEA112904820	Control
0.21	SAMEA7571820	SAMEA112905089	Probiotic
0.21	SAMEA14409936	SAMEA112904743	Control