MGYG000308656

Taxonomy

Caccocola faecigallinarum Bacteria > Synergistota > Synergistia > Synergistales > Synergistaceae > Caccocola > Caccocola faecigallinarum

Cluster representative

MGYG000317423

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317423 on MGnify
 Show other genomes in cluster

Annotations

MGYG000308656’s cluster representative genome MGYG000317423 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317423 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308656 Copy API Endpoint

MGYG000308656’s cluster representative (MGYG000317423) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317423’s sequence. Because MGYG000308656 has been clustered with MGYG000317423 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308656.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317423

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025289	SAMEA112905253	Control
1.00	SAMEA9449949	SAMEA112904930	Prebiotic
1.00	SAMEA10145589	SAMEA112904854	Control
1.00	SAMEA9449947	SAMEA112905276	Prebiotic
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA7571832	SAMEA112905299	Control
1.00	SAMEA10105033	SAMEA112904789	Prebiotic
1.00	SAMEA7571843	SAMEA112904832	Prebiotic
1.00	SAMEA7025287	SAMEA112905268	Prebiotic
1.00	SAMEA9449933	SAMEA112904886	Prebiotic