HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308644

Details for MGYG000308644, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Limosilactobacillus vaginalis Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Limosilactobacillus > Limosilactobacillus vaginalis
Cluster representative

MGYG000317570

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317570 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308644’s cluster representative genome MGYG000317570 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317570 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308644 Copy API Endpoint
Samples containing this genome

MGYG000308644’s cluster representative (MGYG000317570) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317570’s sequence. Because MGYG000308644 has been clustered with MGYG000317570 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308644.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317570

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Containment Sample accession Animal accession Treatment
0.21 SAMEA7697584 Control
0.21 SAMEA10454437 Probiotic
0.21 SAMEA10145583 Control
0.21 SAMEA10104938 Prebiotic
0.21 SAMEA10130099 Probiotic
0.20 SAMEA7571781 Control
0.20 SAMEA10105063 Prebiotic
0.20 SAMEA9449852 Prebiotic
0.20 SAMEA9449904 Control
0.20 SAMEA9449870 Prebiotic