HoloFood Data Portal

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MGYG000308628

Details for MGYG000308628, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UBA4716 sp905215805 Bacteria > Firmicutes_A > Clostridia > UBA1381 > UBA1381 > UBA4716 > UBA4716 sp905215805
Cluster representative

MGYG000311158

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311158 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308628’s cluster representative genome MGYG000311158 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311158 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308628 Copy API Endpoint
Samples containing this genome

MGYG000308628’s cluster representative (MGYG000311158) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311158’s sequence. Because MGYG000308628 has been clustered with MGYG000311158 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308628.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311158

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Containment Sample accession Animal accession Treatment
0.94 SAMEA10159255 Probiotic
0.94 SAMEA7025238 Probiotic
0.89 SAMEA10105015 Probiotic
0.88 SAMEA7571807 Probiotic
0.88 SAMEA10104953 Prebiotic
0.87 SAMEA9449939 Prebiotic
0.86 SAMEA7571819 Probiotic
0.84 SAMEA10104915 Control
0.84 SAMEA9449854 Prebiotic
0.83 SAMEA7025234 Control