HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308602

Details for MGYG000308602, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pararuminococcus gallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Pararuminococcus > Pararuminococcus gallinarum
Cluster representative

MGYG000309360

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309360 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308602’s cluster representative genome MGYG000309360 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309360 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308602 Copy API Endpoint
Samples containing this genome

MGYG000308602’s cluster representative (MGYG000309360) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309360’s sequence. Because MGYG000308602 has been clustered with MGYG000309360 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308602.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309360

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025259 Prebiotic
0.96 SAMEA7571841 Probiotic
0.95 SAMEA7571791 Control
0.95 SAMEA7025255 Prebiotic
0.95 SAMEA7697592 Control
0.94 SAMEA7025277 Control
0.92 SAMEA7025242 Control
0.89 SAMEA7571823 Probiotic
0.88 SAMEA7571838 Control
0.85 SAMEA7571827 Probiotic