MGYG000308602

Taxonomy

Pararuminococcus gallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Pararuminococcus > Pararuminococcus gallinarum

Cluster representative

MGYG000309360

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309360 on MGnify
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Annotations

MGYG000308602’s cluster representative genome MGYG000309360 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309360 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308602 Copy API Endpoint

MGYG000308602’s cluster representative (MGYG000309360) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309360’s sequence. Because MGYG000308602 has been clustered with MGYG000309360 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308602.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309360

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Containment	Sample accession	Animal accession	Treatment
0.20	SAMEA7571848	SAMEA112905284	Prebiotic
0.20	SAMEA10105047	SAMEA112905233	Control