HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308591

Details for MGYG000308591, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovicinus excrementipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Caccovicinus > Caccovicinus excrementipullorum
Cluster representative

MGYG000309688

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309688 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308591’s cluster representative genome MGYG000309688 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309688 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308591 Copy API Endpoint
Samples containing this genome

MGYG000308591’s cluster representative (MGYG000309688) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309688’s sequence. Because MGYG000308591 has been clustered with MGYG000309688 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308591.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309688

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Containment Sample accession Animal accession Treatment
0.26 SAMEA7025282 Control
0.26 SAMEA10159267 Control
0.26 SAMEA7025234 Control
0.26 SAMEA9449829 Control
0.25 SAMEA9449921 Control
0.25 SAMEA10105009 Prebiotic
0.24 SAMEA10159255 Probiotic
0.24 SAMEA7571814 Prebiotic
0.23 SAMEA7697618 Prebiotic
0.23 SAMEA10105016 Probiotic