HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308514

Details for MGYG000308514, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia_A intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia_A > Blautia_A intestinigallinarum
Cluster representative

MGYG000310290

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310290 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308514’s cluster representative genome MGYG000310290 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310290 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308514 Copy API Endpoint
Samples containing this genome

MGYG000308514’s cluster representative (MGYG000310290) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310290’s sequence. Because MGYG000308514 has been clustered with MGYG000310290 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308514.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310290

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Containment Sample accession Animal accession Treatment
0.23 SAMEA9449866 Probiotic
0.23 SAMEA10145599 Control
0.23 SAMEA7697586 Prebiotic
0.23 SAMEA10104987 Control
0.23 SAMEA7025265 Probiotic
0.22 SAMEA7697620 Prebiotic
0.22 SAMEA7025278 Prebiotic
0.22 SAMEA10104944 Probiotic
0.21 SAMEA9449853 Probiotic
0.21 SAMEA7025287 Prebiotic