HoloFood Data Portal

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MGYG000308489

Details for MGYG000308489, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Anaerotignum merdipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Anaerotignaceae > Anaerotignum > Anaerotignum merdipullorum
Cluster representative

MGYG000319893

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319893 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308489’s cluster representative genome MGYG000319893 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319893 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308489 Copy API Endpoint
Samples containing this genome

MGYG000308489’s cluster representative (MGYG000319893) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319893’s sequence. Because MGYG000308489 has been clustered with MGYG000319893 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308489.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319893

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Containment Sample accession Animal accession Treatment
0.99 SAMEA7697598 Control
0.99 SAMEA7571770 Probiotic
0.99 SAMEA10105049 Control
0.99 SAMEA7722473 Prebiotic
0.99 SAMEA10104969 Probiotic
0.99 SAMEA7571789 Probiotic
0.99 SAMEA10159266 Control
0.99 SAMEA7571774 Control
0.99 SAMEA10454437 Probiotic
0.99 SAMEA7025261 Probiotic