HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904859: a HoloFood chicken host

Data available for SAMEA112904859


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 4 derived samples
API endpoint
/api/animals/SAMEA112904859 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904859, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.57 g
Average Daily Feed intake: Day 00 - 35 96.62 g
Average Daily Feed intake: Day 07 - 21 77.33 g
Average Daily Feed intake: Day 21 - 35 157.41 g
Average Daily Gain: Day 00 - 07 19.34 g
Average Daily Gain: Day 00 - 35 63.42 g
Average Daily Gain: Day 07 - 21 55.84 g
Average Daily Gain: Day 21 - 35 93.04 g
Average European Performance Efficiency Factor: Day 00 - 07 181.9 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.385 None
Average Feed to Conversion Ratio: Day 07 - 21 1.385 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.59 g
Average body weight at day 07 180 g
Average body weight at day 21 961.76 g
Average body weight at day 35 2264.3 g
European Performance Efficiency Factor: Day 00 - 35 416.26 None
European Performance Efficiency Factor: Day 07 - 21 403.2 None
European Performance Efficiency Factor: Day 21 - 35 549.89 None
FCR (not corrected): Day 00 - 07 1.063 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.524 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.692 None
Feed to Conversion Ratio: Day 00 - 07 1.063 g/g
Feed to Conversion Ratio: Day 00 - 35 1.524 g/g
Feed to Conversion Ratio: Day 21 - 35 1.692 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=86.21 P1=6.90 P2=6.90 P3=0.00 P4=0.00 %
Litter at Day 07 8.77 pH
Litter at Day 21 8.2 pH
Litter at Day 35 8.16 pH
Mean Abdominal fat Yield 1.45 %
Mean Abdominal fat weight 39.73 g
Mean Breast Yield 19.9 %
Mean Breast weight 543.83 g
Mean CRP at Day 07 1.8375 pg/mg
Mean CRP at Day 21 1.2852 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 2101.6 g
Mean Carcass Yield 77.02 %
Mean HPT at Day 07 2.5698 ng/ml
Mean HPT at Day 21 0.99455 ng/ml
Mean HPT at Day 35 0.73906 ng/ml
Mean LPS at Day 07 6.7979 ng/L
Mean LPS at Day 21 4.7206 ng/L
Mean LPS at Day 35 5.4319 ng/L
Mean Legs Yield 21.1 %
Mean Legs weight 575.15 g
Mean TBARS 0.0867 mg MDA/kg
Mean carcass body weight 2728.3 g
Mean feather cortisol at Day 07 9.6533 pg/mg
Mean feather cortisol at Day 21 8.2033 pg/mg
Mean feather cortisol at Day 35 26.387 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CB08 None

Sample metadata

Marker Measurement Units
Animal code CB08.04 None
Breed Cobb None
C-Reactive protein 3.21 pg/ml
Chicken body weight 203.4 g
Feather cortisol 8.47 pg/mg
Haptoglobin 666.25 ng/ml
Lipopolysaccharide 53.17 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None