HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308477

Details for MGYG000308477, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter stercorigallinarum
Cluster representative

MGYG000314802

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314802 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308477’s cluster representative genome MGYG000314802 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314802 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308477 Copy API Endpoint
Samples containing this genome

MGYG000308477’s cluster representative (MGYG000314802) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314802’s sequence. Because MGYG000308477 has been clustered with MGYG000314802 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308477.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314802

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Containment Sample accession Animal accession Treatment
0.24 SAMEA10159262 Prebiotic
0.24 SAMEA7025252 Prebiotic
0.24 SAMEA9449904 Control
0.24 SAMEA7571774 Control
0.24 SAMEA7571806 Control
0.24 SAMEA10455486 Control
0.23 SAMEA10104965 Prebiotic
0.23 SAMEA10104969 Probiotic
0.23 SAMEA7697609 Probiotic
0.23 SAMEA10454443 Probiotic