HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308451

Details for MGYG000308451, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Acutalibacter stercoravium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Acutalibacter > Acutalibacter stercoravium
Cluster representative

MGYG000308176

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308176 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308451’s cluster representative genome MGYG000308176 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308176 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308451 Copy API Endpoint
Samples containing this genome

MGYG000308451’s cluster representative (MGYG000308176) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308176’s sequence. Because MGYG000308451 has been clustered with MGYG000308176 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308451.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308176

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Containment Sample accession Animal accession Treatment
0.89 SAMEA7025271 Probiotic
0.89 SAMEA7571841 Probiotic
0.88 SAMEA10105016 Probiotic
0.88 SAMEA7025288 Control
0.88 SAMEA7025254 Prebiotic
0.88 SAMEA7571820 Probiotic
0.88 SAMEA7025277 Control
0.88 SAMEA14099424 Prebiotic
0.87 SAMEA10104932 Control
0.87 SAMEA7697588 Probiotic