MGYG000308448

Taxonomy

Bacteroides fragilis_A Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Bacteroides > Bacteroides fragilis_A

Cluster representative

MGYG000317725

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317725 on MGnify
 Show other genomes in cluster

Annotations

MGYG000308448’s cluster representative genome MGYG000317725 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317725 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308448 Copy API Endpoint

MGYG000308448’s cluster representative (MGYG000317725) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317725’s sequence. Because MGYG000308448 has been clustered with MGYG000317725 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308448.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317725

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449942	SAMEA112904956	Control
1.00	SAMEA7571826	SAMEA112905123	Probiotic
1.00	SAMEA7571844	SAMEA112904814	Control
1.00	SAMEA7571829	SAMEA112905154	Prebiotic
1.00	SAMEA9449914	SAMEA112904779	Probiotic
1.00	SAMEA10105058	SAMEA112905194	Control
1.00	SAMEA7025275	SAMEA112905332	Probiotic
1.00	SAMEA7571840	SAMEA112905099	Probiotic
1.00	SAMEA9449948	SAMEA112905355	Prebiotic
1.00	SAMEA10105071	SAMEA112904878	Prebiotic