HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904779: a HoloFood chicken host

Data available for SAMEA112904779


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112904779 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904779, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.69 g
Average Daily Feed intake: Day 00 - 35 90.51 g
Average Daily Feed intake: Day 07 - 21 91.24 g
Average Daily Feed intake: Day 21 - 35 126.07 g
Average Daily Gain: Day 00 - 07 22.27 g
Average Daily Gain: Day 00 - 35 57.48 g
Average Daily Gain: Day 07 - 21 55.11 g
Average Daily Gain: Day 21 - 35 77.45 g
Average European Performance Efficiency Factor: Day 00 - 07 222.97 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.656 None
Average Feed to Conversion Ratio: Day 07 - 21 1.656 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.57 g
Average body weight at day 07 198.47 g
Average body weight at day 21 970 g
Average body weight at day 35 2054.3 g
European Performance Efficiency Factor: Day 00 - 35 355.9 None
European Performance Efficiency Factor: Day 07 - 21 332.88 None
European Performance Efficiency Factor: Day 21 - 35 475.85 None
FCR (not corrected): Day 00 - 07 0.982 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.576 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.628 None
Feed to Conversion Ratio: Day 00 - 07 0.974 g/g
Feed to Conversion Ratio: Day 00 - 35 1.575 g/g
Feed to Conversion Ratio: Day 21 - 35 1.628 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=96.30 P1=3.70 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=76.19 P1=9.52 P2=14.29 P3=0.00 P4=0.00 %
Litter at Day 07 5.73 pH
Litter at Day 21 7.51 pH
Litter at Day 35 8.3 pH
Mean Abdominal fat Yield 1.34 %
Mean Abdominal fat weight 30.02 g
Mean Breast Yield 18.92 %
Mean Breast weight 421.62 g
Mean CRP at Day 07 2.0195 pg/mg
Mean CRP at Day 21 1.702 pg/mg
Mean CRP at Day 35 1.3906 pg/mg
Mean Carcass Weight 1723.1 g
Mean Carcass Yield 77.49 %
Mean HPT at Day 07 0.81479 ng/ml
Mean HPT at Day 21 0.69252 ng/ml
Mean HPT at Day 35 0.73377 ng/ml
Mean LPS at Day 07 4.1426 ng/L
Mean LPS at Day 21 6.4782 ng/L
Mean LPS at Day 35 3.0772 ng/L
Mean Legs Yield 20.75 %
Mean Legs weight 460.53 g
Mean TBARS 0.08 mg MDA/kg
Mean carcass body weight 2225 g
Mean feather cortisol at Day 07 6.2167 pg/mg
Mean feather cortisol at Day 21 7.7833 pg/mg
Mean feather cortisol at Day 35 18.325 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC02 None

Sample metadata

Marker Measurement Units
Animal code CC02.04 None
Breed Cobb None
C-Reactive protein 6.3 pg/ml
Chicken body weight 213.8 g
Feather cortisol 6.44 pg/mg
Haptoglobin 34.19 ng/ml
Lipopolysaccharide 18.97 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None